PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_42257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 190aa    MW: 21704.9 Da    PI: 8.8439
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_42257genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-0690113226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC ff + G+C  G +CkF+H+
  PEQU_42257  90 KSILCEFFKA-GQCAKGFKCKFSHD 113
                 6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15988115IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-488114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-590114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MPPKQQSKAE LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LQQSVQPKPD PSKAAAKKKL  60
EDEKAREKEL NDLFKVAVSQ PKVPIGVDPK SILCEFFKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQQSTETMEE WDQETLEKVV ESKRSEYNQN KPTEIVCCPS FLALFGLTCF  180
SLCEEVFEGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922494.11e-92PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ9SK744e-90C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLS8E8E56e-97S8E8E5_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_13s0019g03490.t015e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.12e-83C3H family protein